Getting Started with Image Analysis

Course Modules

Welcome

Welcome Welcome

Welcome Page

Welcome Welcome 1

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Intro survey Quiz

Intro survey Intro survey 2

quiz 1934346 0

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Workshop outline Page

Workshop outline Workshop outline 3

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Keeping in Touch Page

Keeping in Touch Keeping in Touch 4

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Welcome Zoom Meeting - June 1 Page

Welcome Zoom Meeting - June 1 Welcome Zoom Meeting - June 1 5

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Zoom meeting information Page

Zoom meeting information Zoom meeting information 6

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Introduction to MATLAB

Introduction to MATLAB Introduction to MATLAB

Overview of Module 1 Page

Overview of Module 1 Overview of Module 1 1

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The MATLAB interface Page

The MATLAB interface The MATLAB interface 2

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Your first MATLAB command Page

Your first MATLAB command Your first MATLAB command 3

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Numbers and text Page

Numbers and text Numbers and text 4

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Arithmetic operations Page

Arithmetic operations Arithmetic operations 5

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Checkpoint 1 - 1 Quiz

Checkpoint 1 - 1 Checkpoint 1 - 1 6

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Workshop Zoom Meeting - June 3 Page

Workshop Zoom Meeting - June 3 Workshop Zoom Meeting - June 3 7

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Declaring variables Page

Declaring variables Declaring variables 8

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Writing a script Page

Writing a script Writing a script 9

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A quick note about style Page

A quick note about style A quick note about style 10

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Checkpoint 1 - 2 Quiz

Checkpoint 1 - 2 Checkpoint 1 - 2 11

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Workshop Zoom Meeting - June 5 Page

Workshop Zoom Meeting - June 5 Workshop Zoom Meeting - June 5 12

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Skill Test 1: Introduction to MATLAB Assignment

Skill Test 1: Introduction to MATLAB Skill Test 1: Introduction to MATLAB 0 13

assignment 1939842 1

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Working with matrices

Working with matrices Working with matrices

Git Survey Quiz

Git Survey Git Survey 1

quiz 2006985 0

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Answers for Skill Test 1 Page

Answers for Skill Test 1 Answers for Skill Test 1 2

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Overview of Module 2 Page

Overview of Module 2 Overview of Module 2 3

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Matrices Page

Matrices Matrices 4

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Declaring a matrix Page

Declaring a matrix Declaring a matrix 5

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Indexing Page

Indexing Indexing 6

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Indexing multiple elements Page

Indexing multiple elements Indexing multiple elements 7

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Checkpoint 2 - 1 Quiz

Checkpoint 2 - 1 Checkpoint 2 - 1 8

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Workshop Zoom Meeting - June 10 Page

Workshop Zoom Meeting - June 10 Workshop Zoom Meeting - June 10 9

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Matrix arithmetic Page

Matrix arithmetic Matrix arithmetic 10

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Functions Page

Functions Functions 11

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Statistics functions Page

Statistics functions Statistics functions 12

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Writing your own functions Page

Writing your own functions Writing your own functions 13

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Checkpoint 2 - 2 Quiz

Checkpoint 2 - 2 Checkpoint 2 - 2 14

quiz 1939811 0

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Workshop Zoom Meeting - June 12 Page

Workshop Zoom Meeting - June 12 Workshop Zoom Meeting - June 12 15

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Workshop Zoom Meeting - June 12 (Functions optional) Page

Workshop Zoom Meeting - June 12 (Functions optional) Workshop Zoom Meeting - June 12 (Functions optional) 16

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Skill Test 2: Working with Matrices Assignment

Skill Test 2: Working with Matrices Skill Test 2: Working with Matrices 0 17

assignment 1939844 1

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Segmenting objects

Segmenting objects Segmenting objects

Answers for Skill Test 2 Page

Answers for Skill Test 2 Answers for Skill Test 2 1

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Overview of Module 3 Page

Overview of Module 3 Overview of Module 3 2

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Plotting line graphs Page

Plotting line graphs Plotting line graphs 3

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Installing the Image Processing toolbox Page

Installing the Image Processing toolbox Installing the Image Processing toolbox 4

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Reading and displaying images Page

Reading and displaying images Reading and displaying images 5

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How Image Data Is Stored And Displayed Page

How Image Data Is Stored And Displayed How Image Data Is Stored And Displayed 6

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Adjusting displayed values Page

Adjusting displayed values Adjusting displayed values 7

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Checkpoint 3 - 1 Quiz

Checkpoint 3 - 1 Checkpoint 3 - 1 8

quiz 1945263 0

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Workshop Zoom meeting - June 17 Page

Workshop Zoom meeting - June 17 Workshop Zoom meeting - June 17 9

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The image analysis workflow Page

The image analysis workflow The image analysis workflow 10

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Segmentation Page

Segmentation Segmentation 11

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The image histogram Page

The image histogram The image histogram 12

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Automated intensity thresholding (Otsu's method) Page

Automated intensity thresholding (Otsu's method) Automated intensity thresholding (Otsu's method) 13

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Refining masks using morphological operators Page

Refining masks using morphological operators Refining masks using morphological operators 14

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Checkpoint 3 - 2 Quiz

Checkpoint 3 - 2 Checkpoint 3 - 2 15

quiz 1945564 0

Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete
Workshop Zoom meeting - June 19 Page

Workshop Zoom meeting - June 19 Workshop Zoom meeting - June 19 16

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Skill Test 3: Image segmentation Assignment

Skill Test 3: Image segmentation Skill Test 3: Image segmentation 0 17

assignment 1953806 1

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Data analysis

Data analysis Data analysis

Example answers for Skill Test 3 Page

Example answers for Skill Test 3 Example answers for Skill Test 3 1

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Overview of Module 4 Page

Overview of Module 4 Overview of Module 4 2

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Morphological opening and closing Page

Morphological opening and closing Morphological opening and closing 3

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A note on segmentation Page

A note on segmentation A note on segmentation 4

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Collecting data using regionprops Page

Collecting data using regionprops Collecting data using regionprops 5

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Structured arrays (structs) Page

Structured arrays (structs) Structured arrays (structs) 6

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Measuring intensity Page

Measuring intensity Measuring intensity 7

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Workshop Zoom meeting - June 24 Page

Workshop Zoom meeting - June 24 Workshop Zoom meeting - June 24 8

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Checkpoint 4 - 1 Quiz

Checkpoint 4 - 1 Checkpoint 4 - 1 9

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regionprops with multiple objects Page

regionprops with multiple objects regionprops with multiple objects 10

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Histograms Page

Histograms Histograms 11

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Workshop Zoom meeting - June 26 Page

Workshop Zoom meeting - June 26 Workshop Zoom meeting - June 26 12

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Skill Test 4: Data Analysis Assignment

Skill Test 4: Data Analysis Skill Test 4: Data Analysis 0 13

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Answers for Skill Test 4 Page

Answers for Skill Test 4 Answers for Skill Test 4 14

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Wrap up

Wrap up Wrap up

Thank you Page

Thank you Thank you 1

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Exit Survey Quiz

Exit Survey Exit Survey 2

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Score at least Must score at least to complete this module item Scored at least Module item has been completed by scoring at least View Must view in order to complete this module item Viewed Module item has been viewed and is complete Mark done Must mark this module item done in order to complete Marked done Module item marked as done and is complete Contribute Must contribute to this module item to complete it Contributed Contributed to this module item and is complete Submit Must submit this module item to complete it Submitted Module item submitted and is complete